Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs75306531 chr7:127151869 A/T 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs75352770 chr6:15244210 A/G 6.08E-5 133 37.95 45.1 NA KM Plot
TGCT rs75376200 chr2:29495978 T/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs7539225 chr1:42113523 A/G 0 130 42.18 28.8 0.57 KM Plot
TGCT rs7541822 chr1:42113693 T/C 0 131 42.1 28.8 0.57 KM Plot
TGCT rs75506496 chr6:15241468 A/C 6.08E-5 133 37.95 45.1 NA KM Plot
TGCT rs755298 chr16:27806243 A/G 1.34E-5 130 46.53 37.3 17.27 KM Plot
TGCT rs75576474 chr8:116916019 TA/T 8.4E-7 133 46.3 28.7 18.83 KM Plot
TGCT rs7564525 chr2:3484042 C/T 1.99E-5 133 40.57 66.17 25.32 KM Plot
TGCT rs75760574 chr16:67644173 G/A 0 133 46.07 24.1 0.57 KM Plot
TGCT rs75860786 chr15:34915298 C/T 3.26E-5 132 43.68 22.83 104.57 KM Plot
TGCT rs75915514 chr5:116551905 C/A 1.9E-13 131 46.3 28.8 17.1 KM Plot
TGCT rs7593270 chr2:242136734 T/C 0.000159 133 120.27 41.8 41.97 KM Plot
TGCT rs75939744 chr17:42075144 G/A 0 128 45.83 28.7 0.57 KM Plot
TGCT rs7596352 chr2:3944803 G/T 6.98E-11 129 46.07 40.57 13.43 KM Plot